Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bglBeta-glucosidase. (459 aa)    
Predicted Functional Partners:
aglA
Alpha-glucosidase.
 
 
 0.936
aglA-2
Alpha-glucosidase.
 
 
 0.936
cscA
Sucrose hydrolase.
  
 
 0.932
manA
Beta-mannosidase precursor.
 
   
 0.659
gp36
Phage phi-C31 major capsid gp36-like protein.
   
   0.642
Atu0964
Conserved hypothetical protein.
   
   0.638
Atu0965
Conserved hypothetical protein.
   
   0.638
gp34
Phage head portal protein.
  
   0.636
Atu0959
Hypothetical protein.
    
   0.626
Atu1522
Transcriptional regulator, LacI family.
     
 0.504
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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