Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Atu4486Nitroreductase. (209 aa)    
Predicted Functional Partners:
Atu4667
ABC transporter, nucleotide binding/ATPase protein.
  
  
 0.587
Atu3570
Conserved hypothetical protein.
  
  
 0.576
Atu1906
ABC transporter, membrane spanning protein.
  
  
 0.482
Atu4668
ABC transporter, membrane spanning protein.
  
  
 0.482
Atu4190
Calcium-binding protein, regucalcin.
   
  
 0.479
Atu4197
Conserved hypothetical protein.
   
  
 0.479
Atu3972
Conserved hypothetical protein.
    
 
 0.478
dapA-5
Dihydropicolinate synthase; Belongs to the DapA family.
      
 0.460
Atu4191
Transcriptional regulator, GntR family.
      
 0.460
Atu4192
ABC transporter, substrate binding protein (oligopeptide).
      
 0.460
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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