STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4492Conserved hypothetical protein. (302 aa)    
Predicted Functional Partners:
Atu4493
Conserved hypothetical protein.
 
     0.902
kdgA-2
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
       0.771
Atu3321
Hypothetical protein.
  
     0.677
Atu1877
OmpA family protein.
 
     0.612
Atu0568
Conserved hypothetical protein.
  
     0.597
Atu1710
Conserved hypothetical protein.
  
     0.569
Atu3206
Conserved hypothetical protein.
  
     0.550
Atu1182
Conserved hypothetical protein.
 
     0.539
Atu2203
Conserved hypothetical protein.
  
     0.526
Atu2440
Conserved hypothetical protein.
  
    0.522
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.