STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4522Hypothetical protein. (577 aa)    
Predicted Functional Partners:
Atu4523
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.902
Atu4524
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.900
Atu4525
ABC transporter, substrate binding protein (oligopeptide).
 
     0.835
Atu4521
Transcriptional regulator, AraC family.
 
     0.561
Atu2513
Penicillin binding protein.
  
     0.522
Atu0854
Conserved hypothetical protein.
  
     0.437
Atu8042
Conserved hypothetical protein.
  
     0.430
hasR
Heme receptor.
  
     0.426
Atu4526
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
  
    0.424
Atu2444
Conserved hypothetical protein.
  
   
 0.415
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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