STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4526ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily. (606 aa)    
Predicted Functional Partners:
Atu4525
ABC transporter, substrate binding protein (oligopeptide).
  
    0.677
Atu4523
ABC transporter, membrane spanning protein (oligopeptide).
    0.626
Atu0750
ABC transporter, membrane spanning protein.
  
 
 0.576
Atu4527
Hypothetical protein.
       0.551
Atu4524
ABC transporter, membrane spanning protein (oligopeptide).
  
    0.531
Atu8041
Hypothetical protein.
       0.499
Atu3378
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.419
Atu4522
Hypothetical protein.
  
    0.415
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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