STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4535ABC transporter, substrate binding protein (amino acid). (279 aa)    
Predicted Functional Partners:
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
  0.981
Atu4534
ABC transporter, substrate binding protein (amino acid).
 
  
 
0.964
Atu4536
ABC transporter, membrane spanning protein (amino acid).
 
   0.925
Atu4537
ABC transporter, membrane spanning protein (amino acid).
 
   0.923
Atu4688
ABC transporter, membrane spanning protein (amino acid).
  
 
 0.806
Atu4689
ABC transporter, membrane spanning protein (amino acid).
  
   0.805
Atu1389
ABC transporter, membrane spanning protein.
  
 
 0.804
Atu1398
ABC transporter, membrane spanning protein (amino acid).
  
 
 0.804
Atu1397
ABC transporter, membrane spanning protein (amino acid).
  
   0.803
Atu1390
ABC transporter, membrane spanning protein.
  
   0.801
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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