STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaGProtocatechuate 3,4-dioxygenase alpha chain. (206 aa)    
Predicted Functional Partners:
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.998
pobA
4-hydroxybenzoate hydroxylase.
 
  
 0.993
pcaC-2
Carboxymuconolactone decarboxylase.
 
  
 0.988
pcaD
Beta-ketoadipate enol-lactone hydrolase.
 
   
 0.982
pcaQ
Transcriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate.
 
   
 0.933
pcaC
Putative carboxymuconolactone decarboxylase.
 
  
 0.768
pcaR
Transcriptional regulator, IclR family.
 
  
 0.737
Atu2527
Dioxygenase.
  
  
 0.734
Atu4529
Conserved hypothetical protein.
 
   
 0.632
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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