STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaDBeta-ketoadipate enol-lactone hydrolase. (265 aa)    
Predicted Functional Partners:
pcaC-2
Carboxymuconolactone decarboxylase.
 
 0.999
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
   
 0.975
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
   
 0.974
pcaC
Putative carboxymuconolactone decarboxylase.
 
 
 0.967
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.940
pcaI
3-oxoadipate CoA-transferase subunit A.
  
 
 0.908
pcaJ
3-oxoadipate CoA-transferase subunit B.
  
 
 0.906
pcaQ
Transcriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate.
 
   
 0.902
pobA
4-hydroxybenzoate hydroxylase.
  
  
 0.812
pcaR
Transcriptional regulator, IclR family.
  
   
 0.687
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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