STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
pcaQTranscriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate. (311 aa)    
Predicted Functional Partners:
pcaD
Beta-ketoadipate enol-lactone hydrolase.
 
   
 0.938
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
   
 0.936
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
   
 0.933
pcaC-2
Carboxymuconolactone decarboxylase.
 
   
 0.900
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
     0.833
pobA
4-hydroxybenzoate hydroxylase.
  
   
 0.782
pobR
Transcriptional regulator, AraC family.
  
  
 0.643
pcaR
Transcriptional regulator, IclR family.
  
  
 0.633
Atu1765
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.623
Atu1209
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.618
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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