STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobA4-hydroxybenzoate hydroxylase. (390 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.991
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.988
pcaC-2
Carboxymuconolactone decarboxylase.
 
   
 0.916
pobR
Transcriptional regulator, AraC family.
 
  
 0.828
pcaD
Beta-ketoadipate enol-lactone hydrolase.
  
  
 0.812
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.799
pcaQ
Transcriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate.
  
   
 0.775
pcaC
Putative carboxymuconolactone decarboxylase.
 
   
 0.761
pcaR
Transcriptional regulator, IclR family.
 
   
 0.710
Atu1421
Conserved hypothetical protein.
 
  
 0.705
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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