Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pobA4-hydroxybenzoate hydroxylase. (390 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.993
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.993
pcaC-2
Carboxymuconolactone decarboxylase.
 
   
 0.915
pobR
Transcriptional regulator, AraC family.
 
  
 0.846
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.809
pcaD
Beta-ketoadipate enol-lactone hydrolase.
  
 
 0.805
pcaQ
Transcriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate.
  
   
 0.782
pcaC
Putative carboxymuconolactone decarboxylase.
 
   
 0.745
pcaR
Transcriptional regulator, IclR family.
 
   
 0.711
Atu1421
Conserved hypothetical protein.
 
  
 0.697
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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