STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4560Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (453 aa)    
Predicted Functional Partners:
Atu4561
Conserved hypothetical protein.
 
     0.918
Atu4562
Hypothetical protein.
 
 
 0.882
Atu4558
ABC transporter, membrane spanning protein (sugar).
       0.801
Atu4559
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
       0.801
yteR
Probable di-trans,poly-cis-decaprenylcistransferase; Seems to regulate the surface properties of the bacterium in the presence of plant cells or plant cell extracts. Mutations in this protein are responsible for an increased aggregation of the bacteria in the presence of pea root cap cells (By similarity); Belongs to the glycosyl hydrolase 88 family.
     0.780
kduI
4-deoxy-L-threo-5-hexosulose-uronate; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.719
gp34
Phage head portal protein.
  
   0.629
kdgF
Pectin degradation protein.
  
   
 0.618
uxuA-3
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
     0.568
xynA
Endo-1,4-beta-xylanase.
 
   
 0.561
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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