STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4599Transcriptional regulator, IclR family. (256 aa)    
Predicted Functional Partners:
Atu3912
Conserved hypothetical protein.
  
    0.886
Atu3264
Transcriptional regulator, IclR family.
  
     0.597
Atu4275
Conserved hypothetical protein.
  
    0.538
kdgR-2
Transcriptional regulator.
  
     0.535
Atu4276
Conserved hypothetical protein.
  
    0.528
Atu4598
ABC transporter, nucleotide binding/ATPase protein.
       0.508
Atu4594
Hypothetical protein.
 
     0.463
Atu3911
Conserved hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.435
Atu4592
Conserved hypothetical protein.
 
  
 0.425
Atu4596
Conserved hypothetical protein.
 
     0.406
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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