STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4608Conserved hypothetical protein. (617 aa)    
Predicted Functional Partners:
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
  
  
 0.903
Atu4609
Glycosyltransferase.
 
  
 0.894
manC
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.833
nodX
Sugar acetylase.
     
 0.802
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.788
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
 
 
 0.669
Atu4613
Glycosyltransferase.
  
  
 0.668
Atu4610
Sugar nucleotide epimerase/dehydratase.
  
  
 0.657
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
 
  
 0.656
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
 
 
 0.637
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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