Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dppD-4ABC transporter, nucleotide binding/ATPase protein (dipeptide). (281 aa)    
Predicted Functional Partners:
dppF-3
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
 
 
 
0.990
dppC-4
ABC transporter, membrane spanning protein (dipeptide).
   0.977
dppB-4
ABC transporter, membrane spanning protein (dipeptide).
 
   0.968
Atu3458
ABC transporter, membrane spanning protein.
   0.857
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
   0.856
dppC-2
ABC transporter, membrane spanning protein (dipeptide).
   0.846
Atu3037
ABC transporter, membrane spanning protein (dipeptide).
   0.800
Atu3214
ABC transporter, membrane spanning protein (oligopeptide).
   0.792
Atu3459
ABC transporter, membrane spanning protein.
 
   0.779
Atu3435
ABC transporter, membrane spanning protein (oligopeptide).
   0.771
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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