Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
dppC-4ABC transporter, membrane spanning protein (dipeptide). (299 aa)    
Predicted Functional Partners:
dppB-4
ABC transporter, membrane spanning protein (dipeptide).
 
  0.997
dppD-4
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
   0.977
dppF-3
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
  
 0.961
nikB
ABC transporter, membrane spanning protein.
 
   0.864
Atu4626
ABC transporter, substrate binding protein (oligopeptide).
 
   0.861
Atu4434
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
   0.860
dppD-2
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
   0.853
dppB
ABC transporter, membrane spanning protein (dipeptide).
  
   0.853
Atu3459
ABC transporter, membrane spanning protein.
  
   0.853
Atu3457
ABC transporter, nucleotide binding/ATPase protein.
   0.852
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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