STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4628GGDEF family protein. (779 aa)    
Predicted Functional Partners:
Atu0784
Conserved hypothetical protein.
 
 
0.821
Atu4490
GGDEF family protein.
 
 
0.802
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.762
Atu1114
GGDEF family protein.
 
 
0.744
Atu2291
Conserved hypothetical protein.
 
   
 0.742
Atu0826
Conserved hypothetical protein.
 
 
0.741
Atu3207
GGDEF family protein.
 
 
0.729
Atu3061
GGDEF family protein.
 
 
0.705
ctpF
Components of type IV pilus.
   
    0.658
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.655
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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