STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oxyR-2Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
katA
Catalase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.851
Atu3978
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.718
Atu1209
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.642
Atu4004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.616
Atu4291
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.574
Atu4271
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.568
Atu4872
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.552
Atu2186
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.550
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.524
Atu3951
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.503
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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