STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4644Transcriptional regulator, AraC family. (289 aa)    
Predicted Functional Partners:
Atu1438
Transcriptional regulator, AraC family.
  
     0.659
vdh
Vanillin: NAD oxidoreductase (Putative); Belongs to the aldehyde dehydrogenase family.
 
     0.621
Atu4297
Transcriptional regulator, AraC family.
  
     0.599
Atu0410
Transcriptional regulator, AraC family.
  
     0.572
pobA
4-hydroxybenzoate hydroxylase.
 
   
 0.553
Atu4643
Hypothetical protein.
       0.537
Atu3152
Transcriptional regulator, AraC family.
  
     0.498
Atu4319
Transcriptional regulator, AraC family.
  
 
   0.498
Atu3134
Transcriptional regulator, AraC family.
  
     0.494
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
   
 0.425
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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