STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vdhVanillin: NAD oxidoreductase (Putative); Belongs to the aldehyde dehydrogenase family. (483 aa)    
Predicted Functional Partners:
pobA
4-hydroxybenzoate hydroxylase.
  
 
 0.636
Atu4644
Transcriptional regulator, AraC family.
 
     0.611
Atu1416
long-chain-fatty-acid-CoA-ligase.
 
 
 0.568
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.562
Atu1422
Transcriptional regulator, MarR family.
  
   
 0.526
Atu4529
Conserved hypothetical protein.
 
  
 0.506
acd-3
acyl-CoA dehydrogenase.
   
 
 0.490
gcvT-2
Glycine cleavage system T protein, aminomethyltransferase; Belongs to the GcvT family.
  
  
 0.475
fad
enoyl-CoA hydratase.
  
 
 0.468
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.442
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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