STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4649Carbohydrate kinase. (297 aa)    
Predicted Functional Partners:
argH-2
Argininosuccinate lyase.
 
     0.883
Atu4650
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
    0.806
Atu4654
ABC transporter, substrate binding protein (sugar).
 
    0.747
Atu4653
ABC transporter, membrane spanning protein (sugar).
 
    0.635
Atu2509
Sugar kinase.
  
     0.633
Atu4652
ABC transporter, membrane spanning protein (sugar).
 
    0.625
Atu4656
Conserved hypothetical protein.
 
   
 0.600
iolD
Acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.518
xylR
Transcriptional regulator, ROK family.
 
  
 0.516
iolB
Conserved hypothetical protein.
  
  
 0.506
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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