STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4656Conserved hypothetical protein. (800 aa)    
Predicted Functional Partners:
Atu4657
Conserved hypothetical protein.
 
     0.924
xylR
Transcriptional regulator, ROK family.
 
     0.869
Atu4654
ABC transporter, substrate binding protein (sugar).
 
     0.856
argH-2
Argininosuccinate lyase.
 
     0.800
Atu4653
ABC transporter, membrane spanning protein (sugar).
 
     0.764
Atu4652
ABC transporter, membrane spanning protein (sugar).
 
     0.714
Atu4649
Carbohydrate kinase.
 
   
 0.596
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.460
Atu0597
Conserved hypothetical protein.
  
     0.443
celD
Cellulose biosynthesis protein.
 
  
 0.421
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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