Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
agpTTranscriptional regulator, AraC family. (295 aa)    
Predicted Functional Partners:
melA
Alpha-galactosidase.
 
     0.786
Atu4658
Hypothetical protein.
       0.773
agpA
ABC transporter, substrate binding protein (alpha-galactoside).
 
     0.645
Atu1438
Transcriptional regulator, AraC family.
  
     0.614
Atu0900
Conserved hypothetical protein.
  
     0.550
melA-2
Alpha-galactosidase.
 
     0.500
Atu4521
Transcriptional regulator, AraC family.
  
     0.427
Atu4663
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.425
Atu4662
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.416
Atu4362
Conserved hypothetical protein.
  
     0.405
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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