Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
melA-2Alpha-galactosidase. (457 aa)    
Predicted Functional Partners:
melA
Alpha-galactosidase.
 
  
 
0.946
cscA
Sucrose hydrolase.
  
  
 0.934
aglA
Alpha-glucosidase.
     
 0.906
aglA-2
Alpha-glucosidase.
     
 0.906
fabG
3-oxoacyl-(acyl carrier protein) reductase.
     
  0.900
Atu1113
Dehydrogenase.
     
  0.900
Atu2596
beta-N-acetylhexosaminidase.
     
  0.900
Atu2719
Aldose epimerase; Converts alpha-aldose to the beta-anomer.
     
  0.900
Atu4083
Putative aldose epimerase.
     
  0.900
Atu4197
Conserved hypothetical protein.
     
  0.900
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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