Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu4666HlyD family secretion protein. (354 aa)    
Predicted Functional Partners:
Atu4667
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.979
Atu4668
ABC transporter, membrane spanning protein.
 
  
 0.978
nodT
Nodulation protein T precursor.
 
 
 0.739
Atu1817
Conserved hypothetical protein.
 
  
 0.726
copB
Copper tolerance protein.
  
 
 0.582
Atu2577
ABC transporter, nucleotide binding/ATPase protein.
  
 
 0.580
Atu1907
ABC transporter, nucleotide binding/ATPase protein.
  
  
 0.430
Atu4669
Hypothetical protein.
       0.422
melA-2
Alpha-galactosidase.
       0.408
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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