Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4667ABC transporter, nucleotide binding/ATPase protein. (925 aa)    
Predicted Functional Partners:
Atu4666
HlyD family secretion protein.
 
  
 0.979
Atu4668
ABC transporter, membrane spanning protein.
 
  
0.958
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
  
  
 0.896
Atu3570
Conserved hypothetical protein.
  
  
 0.787
Atu3638
Conserved hypothetical protein.
  
  
 0.740
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 
 0.679
atpC-2
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.674
gltB
Glutamate synthase large subunit.
  
    0.656
gltB-2
Glutamate synthase large subunit.
  
    0.656
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.651
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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