Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Atu0527 | Atu1987 | Two component sensor kinase/response regulator hybrid. | Two component response regulator. | 0.410 |
Atu0527 | Atu4047 | Two component sensor kinase/response regulator hybrid. | Two component sensor kinase/response regulator hybrid. | 0.981 |
Atu0527 | Atu4162 | Two component sensor kinase/response regulator hybrid. | Two component response regulator. | 0.828 |
Atu0527 | Atu4671 | Two component sensor kinase/response regulator hybrid. | Two component response regulator. | 0.421 |
Atu1182 | Atu4164 | Conserved hypothetical protein. | Two component sensor kinase. | 0.462 |
Atu1182 | Atu4671 | Conserved hypothetical protein. | Two component response regulator. | 0.421 |
Atu1987 | Atu0527 | Two component response regulator. | Two component sensor kinase/response regulator hybrid. | 0.410 |
Atu1987 | Atu2180 | Two component response regulator. | Conserved hypothetical protein. | 0.482 |
Atu1987 | Atu4047 | Two component response regulator. | Two component sensor kinase/response regulator hybrid. | 0.549 |
Atu1987 | Atu4160 | Two component response regulator. | ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.419 |
Atu1987 | Atu4162 | Two component response regulator. | Two component response regulator. | 0.695 |
Atu1987 | Atu4163 | Two component response regulator. | Two component sensor kinase. | 0.717 |
Atu1987 | Atu4164 | Two component response regulator. | Two component sensor kinase. | 0.734 |
Atu1987 | Atu4671 | Two component response regulator. | Two component response regulator. | 0.532 |
Atu2180 | Atu1987 | Conserved hypothetical protein. | Two component response regulator. | 0.482 |
Atu2180 | Atu4671 | Conserved hypothetical protein. | Two component response regulator. | 0.454 |
Atu4047 | Atu0527 | Two component sensor kinase/response regulator hybrid. | Two component sensor kinase/response regulator hybrid. | 0.981 |
Atu4047 | Atu1987 | Two component sensor kinase/response regulator hybrid. | Two component response regulator. | 0.549 |
Atu4047 | Atu4162 | Two component sensor kinase/response regulator hybrid. | Two component response regulator. | 0.878 |
Atu4047 | Atu4671 | Two component sensor kinase/response regulator hybrid. | Two component response regulator. | 0.564 |
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