Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4674Transcriptional regulator, GntR family. (232 aa)    
Predicted Functional Partners:
Atu0791
Transcriptional regulator, GntR family.
  
     0.759
Atu4118
Transcriptional regulator, GntR family.
  
     0.755
Atu4232
Transcriptional regulator, GntR family.
  
     0.755
Atu1387
Transcriptional regulator, GntR family.
  
     0.746
Atu2504
Transcriptional regulator, GntR family.
  
     0.698
Atu3794
Transcriptional regulator, FadR/GntR family.
  
    0.682
dapA-6
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.664
Atu2740
Transcriptional regulator, GntR family.
  
    0.635
Atu4624
Transcriptional regulator, GntR family.
  
    0.611
Atu4191
Transcriptional regulator, GntR family.
  
    0.569
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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