STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4679ABC transporter, membrane spanning protein (amino acid). (221 aa)    
Predicted Functional Partners:
Atu4681
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
  0.995
Atu4680
ABC transporter, membrane spanning protein (amino acid).
 
 
 
0.984
Atu4678
ABC transporter, substrate binding protein (amino acid).
 
  0.983
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.854
dadA-2
D-amino acid dehydrogenase, small subunit.
 
     0.835
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
 
   0.795
Atu3417
ABC transporter, nucleotide binding/ATPase protein.
 
  0.794
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
 
   0.770
Atu4687
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
  
   0.770
Atu4284
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
  
   0.766
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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