STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4680ABC transporter, membrane spanning protein (amino acid). (217 aa)    
Predicted Functional Partners:
Atu4681
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 0.997
Atu4679
ABC transporter, membrane spanning protein (amino acid).
 
 
 
0.984
Atu4678
ABC transporter, substrate binding protein (amino acid).
 
 0.982
dadA-2
D-amino acid dehydrogenase, small subunit.
 
     0.903
Atu4688
ABC transporter, membrane spanning protein (amino acid).
 
 
  0.866
Atu1881
ABC transporter, membrane spanning protein (amino acid).
  
  
  0.833
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.816
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.797
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.796
Atu4752
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.793
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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