Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Atu3364 | Atu4684 | Atu3364 | Atu4684 | D-amino acid dehydrogenase. | Conserved hypothetical protein; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). Can also catalyze the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4- hydroxy-D-proline (c4DHyp), albeit with 30-fold lower efficiency. Is likely involved in both degradation pathways that convert t3LHyp to L- proline and t4LHyp to alpha-ketoglutarate, which would allow A.tumefaciens to grow on t3LHyp or t4LHyp as a sole carbon source. Displays no proline racemase activity. | 0.688 |
| Atu3364 | dadA-2 | Atu3364 | Atu4682 | D-amino acid dehydrogenase. | D-amino acid dehydrogenase, small subunit. | 0.904 |
| Atu3364 | dapA-6 | Atu3364 | Atu4675 | D-amino acid dehydrogenase. | Dihydrodipicolinate synthase; Belongs to the DapA family. | 0.609 |
| Atu4676 | Atu4678 | Atu4676 | Atu4678 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | ABC transporter, substrate binding protein (amino acid). | 0.780 |
| Atu4676 | Atu4679 | Atu4676 | Atu4679 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | ABC transporter, membrane spanning protein (amino acid). | 0.508 |
| Atu4676 | Atu4680 | Atu4676 | Atu4680 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | ABC transporter, membrane spanning protein (amino acid). | 0.497 |
| Atu4676 | Atu4681 | Atu4676 | Atu4681 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | ABC transporter, nucleotide binding/ATPase protein (amino acid). | 0.408 |
| Atu4676 | Atu4683 | Atu4676 | Atu4683 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | Conserved hypothetical protein. | 0.857 |
| Atu4676 | Atu4684 | Atu4676 | Atu4684 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | Conserved hypothetical protein; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). Can also catalyze the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4- hydroxy-D-proline (c4DHyp), albeit with 30-fold lower efficiency. Is likely involved in both degradation pathways that convert t3LHyp to L- proline and t4LHyp to alpha-ketoglutarate, which would allow A.tumefaciens to grow on t3LHyp or t4LHyp as a sole carbon source. Displays no proline racemase activity. | 0.718 |
| Atu4676 | arcB | Atu4676 | Atu3949 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | Ornithine cyclodeaminase. | 0.468 |
| Atu4676 | dadA-2 | Atu4676 | Atu4682 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | D-amino acid dehydrogenase, small subunit. | 0.773 |
| Atu4676 | dapA-6 | Atu4676 | Atu4675 | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | Dihydrodipicolinate synthase; Belongs to the DapA family. | 0.676 |
| Atu4678 | Atu4676 | Atu4678 | Atu4676 | ABC transporter, substrate binding protein (amino acid). | Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family. | 0.780 |
| Atu4678 | Atu4679 | Atu4678 | Atu4679 | ABC transporter, substrate binding protein (amino acid). | ABC transporter, membrane spanning protein (amino acid). | 0.983 |
| Atu4678 | Atu4680 | Atu4678 | Atu4680 | ABC transporter, substrate binding protein (amino acid). | ABC transporter, membrane spanning protein (amino acid). | 0.982 |
| Atu4678 | Atu4681 | Atu4678 | Atu4681 | ABC transporter, substrate binding protein (amino acid). | ABC transporter, nucleotide binding/ATPase protein (amino acid). | 0.980 |
| Atu4678 | Atu4683 | Atu4678 | Atu4683 | ABC transporter, substrate binding protein (amino acid). | Conserved hypothetical protein. | 0.814 |
| Atu4678 | Atu4684 | Atu4678 | Atu4684 | ABC transporter, substrate binding protein (amino acid). | Conserved hypothetical protein; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). Can also catalyze the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4- hydroxy-D-proline (c4DHyp), albeit with 30-fold lower efficiency. Is likely involved in both degradation pathways that convert t3LHyp to L- proline and t4LHyp to alpha-ketoglutarate, which would allow A.tumefaciens to grow on t3LHyp or t4LHyp as a sole carbon source. Displays no proline racemase activity. | 0.718 |
| Atu4678 | dadA-2 | Atu4678 | Atu4682 | ABC transporter, substrate binding protein (amino acid). | D-amino acid dehydrogenase, small subunit. | 0.852 |
| Atu4678 | dapA-6 | Atu4678 | Atu4675 | ABC transporter, substrate binding protein (amino acid). | Dihydrodipicolinate synthase; Belongs to the DapA family. | 0.657 |
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