Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4689ABC transporter, membrane spanning protein (amino acid). (219 aa)    
Predicted Functional Partners:
Atu4688
ABC transporter, membrane spanning protein (amino acid).
 
  
 
0.982
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.969
Atu4690
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
   0.942
Atu4687
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.915
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
 
   0.855
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
 
   0.841
Atu4681
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
   0.830
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
   0.822
Atu3360
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
   0.821
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
 
   0.817
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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