Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu4698Hydrolase. (397 aa)    
Predicted Functional Partners:
trzA
N-ethylammeline chlorohydrolase.
 
   
 0.946
Atu4701
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
 
    0.847
Atu4697
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.824
Atu4700
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
 
    0.822
Atu4696
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.758
Atu4695
ABC transporter, substrate binding protein (oligopeptide).
 
     0.695
Atu4694
Chlorohydrolase.
 
   
 0.552
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
  
 0.449
Atu3376
Beta-lactamase.
  
    0.443
codA
Cytidine and deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.440
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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