STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4705Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
fdsD
NAD-dependent formate dehydrogenase delta subunit.
 
     0.832
fdhF-2
Formate dehydrogenase alpha subunit.
 
     0.816
nuoF-2
NADH ubiquinone oxidoreductase chain F.
 
     0.696
nuoE-2
NADH ubiquinone oxidoreductase chain E.
 
     0.688
Atu4703
Conserved hypothetical protein.
 
     0.584
huy
Hydantoin racemase.
       0.523
fdhD
NAD-dependent formate dehydrogenase, C subunit protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.514
Atu4710
MFS permease.
 
     0.495
Atu3889
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.448
Atu3978
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.432
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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