Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu4716Transcriptional regulator, LuxR family. (492 aa)    
Predicted Functional Partners:
Atu8096
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
     0.717
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.647
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.615
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
 0.508
Atu4714
Conserved hypothetical protein.
       0.486
Atu8199
Conserved hypothetical protein.
       0.486
Atu4718
Transcriptional regulator, GntR family.
  
    0.480
fliF
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
  
 0.473
Atu0568
Conserved hypothetical protein.
      
 0.443
Atu0583
Hypothetical protein.
      
 0.443
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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