Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dppA-3ABC transporter, substrate binding protein (dipeptide). (502 aa)    
Predicted Functional Partners:
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
 
  0.992
dppB-5
ABC transporter, membrane spanning protein (dipeptide).
 
  0.991
ggt
Gamma-glutamyltranspeptidase.
 
   
 0.852
Atu4718
Transcriptional regulator, GntR family.
 
     0.715
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.538
dppA-2
ABC transporter, substrate binding protein (dipeptide).
  
  
0.535
Atu4525
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.516
Atu3267
ABC transporter, membrane spanning protein (dipeptide).
  
   0.512
Atu3442
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.504
Atu3444
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.500
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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