Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
dppC-5ABC transporter, membrane spanning protein (dipeptide). (268 aa)    
Predicted Functional Partners:
dppB-5
ABC transporter, membrane spanning protein (dipeptide).
 
  0.997
dppA-3
ABC transporter, substrate binding protein (dipeptide).
 
  0.992
Atu4723
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   0.854
nikB
ABC transporter, membrane spanning protein.
  
   0.850
dppB-2
ABC transporter, membrane spanning protein (peptide).
  
   0.850
Atu4524
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.850
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.849
Atu3213
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.841
dppD
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   0.838
Atu3036
ABC transporter, membrane spanning protein (dipeptide).
  
   0.837
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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