STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4731Fimbrial usher protein. (812 aa)    
Predicted Functional Partners:
Atu4732
Fimbrial chaperone.
 
 0.999
Atu4730
Conserved hypothetical protein.
 
 
 0.997
Atu4733
Conserved hypothetical protein.
 
 
 0.995
Atu3553
Hypothetical protein.
  
  
 0.694
Atu0480
Polysaccharide biosynthesis protein.
 
     0.650
Atu3549
Conserved hypothetical protein.
  
     0.560
rzcA-2
rhizobiocin/RTX toxin.
  
  
 0.522
exoH
Succinoglycan biosynthesis protein.
  
     0.506
Atu3321
Hypothetical protein.
  
     0.497
Atu3546
Hypothetical protein.
  
     0.490
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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