STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4732Fimbrial chaperone. (238 aa)    
Predicted Functional Partners:
Atu4731
Fimbrial usher protein.
 
 
 0.996
Atu4730
Conserved hypothetical protein.
 
 
 0.979
Atu4733
Conserved hypothetical protein.
 
 
 0.974
Atu3553
Hypothetical protein.
  
    0.624
rzcA-2
rhizobiocin/RTX toxin.
  
  
 0.591
Atu0480
Polysaccharide biosynthesis protein.
 
     0.547
rzcA
Rhizobiocin.
   
  
 0.540
Atu3549
Conserved hypothetical protein.
  
     0.461
Atu2287
Outer membrane heme receptor.
  
   
 0.417
Atu3321
Hypothetical protein.
  
     0.411
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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