STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpeD-psicose 3-epimerase; Involved in the biosynthesis of D-psicose. Catalyzes the reversible epimerization of D-fructose at the C3 position to yield D- psicose. The enzyme is highly specific for D-psicose and shows very low activity with D-tagatose. The substrate specificity decreases in the following order: D-fructose, D-tagatose, D-ribulose, D-xylulose, and D- sorbose. It shows a higher level of activity for cis ketoses than for trans-ketoses; Belongs to the hyi family. (289 aa)    
Predicted Functional Partners:
Atu4748
D-tagatose 3-epimerase.
 
    
0.623
FrcK
Conserved hypothetical protein.
       0.593
iolD
Acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.592
Atu4747
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.583
Atu4746
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.569
iolB
Conserved hypothetical protein.
 
  
 0.556
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.554
Atu4744
ABC transporter, substrate binding protein (sugar).
 
    0.544
iolC
Myo-inositol catabolism IolC protein.
 
  
 0.518
Atu4745
ABC transporter, nucleotide binding/ATPase protein (sugar).
  
    0.503
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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