STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4756Conserved hypothetical protein. (337 aa)    
Predicted Functional Partners:
Atu4757
Xaa-Pro dipeptidase.
 
  
 0.994
bioA-3
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.961
arcB-2
Ornithine cyclodeaminase.
 
     0.877
tdcB
Threonine dehydratase.
 
     0.839
Atu4760
Transcriptional regulator, GntR family.
 
     0.749
Atu4755
ABC transporter, substrate binding protein (amino acid).
 
    0.687
Atu4753
ABC transporter, membrane spanning protein (amino acid).
 
   
 0.537
Atu4754
ABC transporter, membrane spanning protein (amino acid).
 
   
 0.536
Atu4752
ABC transporter, nucleotide binding/ATPase protein (amino acid).
       0.456
Atu0527
Two component sensor kinase/response regulator hybrid.
     
 0.407
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.