STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
afuBABC transporter, membrane spanning protein (iron). (743 aa)    
Predicted Functional Partners:
afuC
ABC transporter, nucleotide binding/ATPase protein (iron); Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 0.997
afuA-2
ABC transporter, substrate binding protein (iron).
 
  
 0.961
afuA
ABC transporter, substrate binding protein (iron).
 
  
 0.910
Atu4578
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
 0.871
fbpA1
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
 0.870
Atu4577
ABC transporter, substrate binding protein.
 
  
 0.834
Atu4787
Inositol monophosphatase family protein.
 
     0.810
Atu2012
ABC transporter, nucleotide binding/ATPase protein.
     
  0.800
Atu2014
ABC transporter, substrate binding protein.
 
  
 0.674
fbpA
ABC transporter, substrate binding protein (iron).
  
  
 0.629
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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