STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bme11Exopolysaccharide production protein. (419 aa)    
Predicted Functional Partners:
bme12
Polysaccharide biosynthesis protein.
 
 
 0.989
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
 
  
 0.928
exoP-2
Exopolysaccharide polymerization/transport protein.
 
 
 0.927
gumB
Polysaccharide export protein.
  
  
 
0.925
Atu3556
Exopolysaccharide polymerization/transport protein.
 
 
 0.924
exoP
Exopolysaccharide production protein.
 
 
 0.911
pssN
Exopolysaccharide export protein.
     
  0.900
bexD
Polysaccharide export protein.
     
  0.900
Atu2377
Succinoglycan biosynthesis transport protein.
 
 
 0.851
bme13
Transcriptional regulator, LuxR family.
       0.608
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.