STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pssFGlycosyltransferase. (319 aa)    
Predicted Functional Partners:
pssL
Exopolysaccharide export protein.
 
  
 0.898
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
 
  
 0.753
exoW
Succinoglycan biosynthesis protein.
 
     0.722
exoU-2
Succinoglycan biosynthesis glycosyltransferase.
  
     0.694
exoY
Succinoglycan exopolysaccharide synthesis protein.
 
  
 0.588
exoT
Succinoglycan biosynthesis transport protein.
 
  
 0.568
Atu0102
Exopolysaccharide production protein.
 
  
 0.566
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.549
amsJ
Exopolysaccharide synthesis protein.
 
  
 0.540
Atu4801
NAD-dependent epimerase/dehydratase.
 
 
 0.496
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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