Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4824Transcriptional regulator, IclR family. (288 aa)    
Predicted Functional Partners:
acaB
Acetyl CoA synthase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.953
Atu4822
Fatty acid CoA ligase.
 
 
   0.949
Atu4820
Hypothetical protein.
 
     0.926
Atu3912
Conserved hypothetical protein.
  
    0.886
Atu4825
Dehydrogenase.
 
     0.834
fabG-6
3-oxoacyl-(acyl-carrier protein) reductase.
 
     0.738
Atu4826
ABC transporter, substrate binding protein.
 
     0.680
Atu4827
ABC transporter, membrane spanning protein.
 
     0.573
Atu4275
Conserved hypothetical protein.
  
    0.538
Atu4276
Conserved hypothetical protein.
  
    0.528
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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