STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4824Transcriptional regulator, IclR family. (288 aa)    
Predicted Functional Partners:
Atu4822
Fatty acid CoA ligase.
 
 
 
 0.946
acaB
Acetyl CoA synthase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.946
Atu4820
Hypothetical protein.
 
     0.924
Atu3912
Conserved hypothetical protein.
  
    0.871
Atu4825
Dehydrogenase.
 
    0.820
fabG-6
3-oxoacyl-(acyl-carrier protein) reductase.
 
    0.739
Atu4826
ABC transporter, substrate binding protein.
 
     0.682
Atu4827
ABC transporter, membrane spanning protein.
 
     0.580
Atu4275
Conserved hypothetical protein.
  
    0.488
Atu8042
Conserved hypothetical protein.
 
     0.459
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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