Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4825Dehydrogenase. (271 aa)    
Predicted Functional Partners:
acaB
Acetyl CoA synthase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.882
Atu4822
Fatty acid CoA ligase.
 
   0.851
Atu4824
Transcriptional regulator, IclR family.
 
     0.834
fabG-6
3-oxoacyl-(acyl-carrier protein) reductase.
 
    
0.781
Atu4820
Hypothetical protein.
 
    0.739
Atu4826
ABC transporter, substrate binding protein.
 
     0.635
Atu3051
Agropine synthesis reductase.
  
    0.633
Atu1130
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.602
Atu2668
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.538
Atu4865
Oxidoreductase.
  
     0.527
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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