STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4842ABC transporter, substrate binding protein (sugar). (348 aa)    
Predicted Functional Partners:
ydeZ
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
   0.914
rbsC-7
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
   0.910
Atu4846
Conserved hypothetical protein.
 
     0.879
Atu4843
ABC transporter, nucleotide binding/ATPase protein (sugar).
 
   0.796
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
 
 0.706
Atu4047
Two component sensor kinase/response regulator hybrid.
   
 
 0.698
rbsk
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
    0.693
Atu0527
Two component sensor kinase/response regulator hybrid.
   
 
 0.672
Atu1362
Two component sensor kinase.
   
 
 0.669
Atu2332
Two component sensor kinase/response regulator hybrid.
   
 
 0.669
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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