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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4870NADP-dependent quinone oxidoreductase. (319 aa)    
Predicted Functional Partners:
nodN
Nodulation protein N.
 
 
 0.589
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
 
 
 0.557
Atu3681
Polyketide synthetase, siderophore biosynthesis protein.
 
 
 0.555
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
 
  
 0.541
Atu3163
Zinc-binding dehydrogenase; Involved in D-altritol catabolism. Catalyzes the oxidation of D-altritol to D-tagatose.
 
  
 0.507
Atu4740
Zinc-binding dehydrogenase.
 
  
 0.497
Atu4872
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.497
Atu3356
NADP-dependent malic enzyme.
 
   
 0.485
maeB
NADP-dependent malic enzyme.
 
   
 0.484
adhC-2
Alcohol dehydrogenase.
  
  
 0.480
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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