Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4870NADP-dependent quinone oxidoreductase. (319 aa)    
Predicted Functional Partners:
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
 
 
 0.621
nodN
Nodulation protein N.
 
 
 0.592
Atu4416
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
    
   0.534
Atu3681
Polyketide synthetase, siderophore biosynthesis protein.
 
 
 0.518
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
  
  
 0.515
Atu3163
Zinc-binding dehydrogenase; Involved in D-altritol catabolism. Catalyzes the oxidation of D-altritol to D-tagatose.
 
  
 0.498
Atu4872
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.497
Atu4740
Zinc-binding dehydrogenase.
 
  
 0.487
adhC-2
Alcohol dehydrogenase.
  
  
 0.473
impM
Serine/threonine phosphoprotein phosphatase.
   
   0.473
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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