Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu8032Conserved hypothetical protein. (161 aa)    
Predicted Functional Partners:
Atu3464
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.787
cpoF
Non-heme chloroperoxidase.
       0.682
Atu3462
Transcriptional regulator, AraC family.
       0.479
blh
Metallo-beta-lactamase superfamily protein; Could play a role in cell adherence or biofilm development. Belongs to the metallo-beta-lactamase superfamily.
       0.442
Atu4003
Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
  
     0.437
Atu3276
Conserved hypothetical protein.
  
     0.433
bigR
Transcriptional regulator, ArsR family; Represses an operon that comprises at least itself and blh. Binds to a palindromic AT-rich sequence spanning the -10 region of the blh promoter and blocks transcription of the operon.
       0.426
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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