STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8090Conserved hypothetical protein. (239 aa)    
Predicted Functional Partners:
Atu1349
Hypothetical protein.
  
     0.766
Atu2052
Conserved hypothetical protein.
  
     0.759
Atu0147
Conserved hypothetical protein.
  
     0.753
Atu0148
Atu0148-1 mutant of a conserved hypothetical protein.
  
     0.747
Atu1348
Conserved hypothetical protein.
  
     0.745
ctpE
Components of type IV pilus.
  
     0.738
Atu0499
Conserved hypothetical protein.
  
     0.734
Atu0920
Conserved hypothetical protein.
  
     0.733
Atu3868
Hypothetical protein.
  
     0.727
Atu8167
Putative transmembrane protein.
  
     0.723
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.