STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8096Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family. (59 aa)    
Predicted Functional Partners:
Atu8199
Conserved hypothetical protein.
       0.775
Atu4714
Conserved hypothetical protein.
       0.773
Atu4467
Conserved hypothetical protein.
  
  
 0.735
Atu4716
Transcriptional regulator, LuxR family.
 
     0.717
Atu3728
Conserved hypothetical protein.
  
    0.621
Atu2431
Conserved hypothetical protein.
   
    0.501
Atu1003
Conserved hypothetical protein.
 
  
 0.480
Atu0443
Putative phage repressor.
  
     0.473
Atu1999
Conserved hypothetical protein.
   
    0.465
Atu2193
Conserved hypothetical protein.
  
     0.418
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.